IL_4U25_156

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

4U25|1|BA|A|2572, 4U25|1|BA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_156 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0735

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4U25|1|BA|C|2512
4U25|1|BA|A|2513
*
4U25|1|BA|U|2571
4U25|1|BA|A|2572
4U25|1|BA|C|2573
4U25|1|BA|G|2574

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3