IL_4U25_194

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_194 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0737

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4U25|1|CA|U|409
4U25|1|CA|G|410
4U25|1|CA|A|411
4U25|1|CA|A|412
4U25|1|CA|G|413
4U25|1|CA|A|414
4U25|1|CA|A|415
4U25|1|CA|G|416
*
4U25|1|CA|U|427
4U25|1|CA|G|428
4U25|1|CA|U|429
4U25|1|CA|A|430
4U25|1|CA|A|431
4U25|1|CA|A|432
4U25|1|CA|G|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain CD

30S ribosomal protein S4