IL_4U25_226
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- 4U25|1|CA|U|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_226 not in the Motif Atlas
- Geometric match to IL_4LFB_050
- Geometric discrepancy: 0.1799
- The information below is about IL_4LFB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32376.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4U25|1|CA|C|1158
4U25|1|CA|U|1159
4U25|1|CA|G|1160
4U25|1|CA|C|1161
*
4U25|1|CA|G|1175
4U25|1|CA|A|1176
4U25|1|CA|G|1177
4U25|1|CA|G|1178
4U25|1|CA|A|1179
4U25|1|CA|A|1180
4U25|1|CA|G|1181
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CB
- 30S ribosomal protein S2
- Chain CI
- 30S ribosomal protein S9
Coloring options: