IL_4U25_233

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_233 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1502

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4U25|1|CA|G|1405
4U25|1|CA|U|1406
4U25|1|CA|C|1407
*
4U25|1|CA|G|1494
4U25|1|CA|U|1495
4U25|1|CA|C|1496

Current chains

Chain CA

16S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA