IL_4U25_247

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

4U25|1|DA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_247 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2268

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4U25|1|DA|C|274
4U25|1|DA|C|275
4U25|1|DA|U|276
4U25|1|DA|G|277
4U25|1|DA|A|278
4U25|1|DA|A|279
4U25|1|DA|U|280
4U25|1|DA|C|281
*
4U25|1|DA|G|359
4U25|1|DA|U|360
4U25|1|DA|G|361
4U25|1|DA|A|362
4U25|1|DA|G|363

Current chains

Chain DA

23S rRNA

Nearby chains