IL_4U25_247
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAAUC*GUGAG
- Length
- 13 nucleotides
- Bulged bases
- 4U25|1|DA|G|277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_247 not in the Motif Atlas
- Homologous match to IL_5J7L_253
- Geometric discrepancy: 0.2268
- The information below is about IL_5J7L_253
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77870.1
- Basepair signature
- cWW-L-R-L-tHS-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U25|1|DA|C|274
4U25|1|DA|C|275
4U25|1|DA|U|276
4U25|1|DA|G|277
4U25|1|DA|A|278
4U25|1|DA|A|279
4U25|1|DA|U|280
4U25|1|DA|C|281
*
4U25|1|DA|G|359
4U25|1|DA|U|360
4U25|1|DA|G|361
4U25|1|DA|A|362
4U25|1|DA|G|363
Current chains
- Chain DA
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: