IL_4U25_249

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4U25|1|DA|A|504, 4U25|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_249 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.1032

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4U25|1|DA|G|481
4U25|1|DA|A|482
4U25|1|DA|A|483
4U25|1|DA|C|484
*
4U25|1|DA|G|496
4U25|1|DA|A|497
4U25|1|DA|G|498
4U25|1|DA|U|499
4U25|1|DA|G|500
4U25|1|DA|A|501
4U25|1|DA|A|502
4U25|1|DA|A|503
4U25|1|DA|A|504
4U25|1|DA|A|505
4U25|1|DA|G|506
4U25|1|DA|A|507
4U25|1|DA|A|508
4U25|1|DA|C|509

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24