IL_4U25_269

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

4U25|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_269 not in the Motif Atlas

Geometric match to IL_4V88_424

Geometric discrepancy: 0.3618

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4U25|1|DA|G|880
4U25|1|DA|G|881
4U25|1|DA|G|882
*
4U25|1|DA|U|894
4U25|1|DA|U|895
4U25|1|DA|A|896
4U25|1|DA|C|897

Current chains

Chain DA

23S rRNA

Nearby chains