IL_4U25_291

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

4U25|1|DA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_291 not in the Motif Atlas

Homologous match to IL_5J7L_298

Geometric discrepancy: 0.1853

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4U25|1|DA|G|1450
4U25|1|DA|C|1451
*
4U25|1|DA|G|1459
4U25|1|DA|U|1460
4U25|1|DA|C|1461

Current chains

Chain DA

23S rRNA

Nearby chains