3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AGAGAAC*GACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U25|1|DA|A|1650
4U25|1|DA|G|1651
4U25|1|DA|A|1652
4U25|1|DA|G|1653
4U25|1|DA|A|1654
4U25|1|DA|A|1655
4U25|1|DA|C|1656
*
4U25|1|DA|G|2004
4U25|1|DA|A|2005
4U25|1|DA|C|2006
4U25|1|DA|U|2007

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DD
50S ribosomal protein L3
Chain DN
50S ribosomal protein L17

Coloring options:

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