3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_299 not in the Motif Atlas
Geometric match to IL_5J7L_306
Geometric discrepancy: 0.0838
The information below is about IL_5J7L_306
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4U25|1|DA|G|1666
4U25|1|DA|G|1667
4U25|1|DA|A|1668
4U25|1|DA|A|1669
*
4U25|1|DA|U|1993
4U25|1|DA|C|1994

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DD
50S ribosomal protein L3
Chain DK
50S ribosomal protein L14

Coloring options:


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