IL_4U25_301
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 4U25|1|DA|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_301 not in the Motif Atlas
- Homologous match to IL_5J7L_308
- Geometric discrepancy: 0.0709
- The information below is about IL_5J7L_308
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4U25|1|DA|C|1686
4U25|1|DA|G|1687
4U25|1|DA|U|1688
4U25|1|DA|A|1689
4U25|1|DA|A|1690
4U25|1|DA|C|1691
*
4U25|1|DA|G|1696
4U25|1|DA|G|1697
4U25|1|DA|A|1698
4U25|1|DA|G|1699
4U25|1|DA|A|1700
4U25|1|DA|A|1701
4U25|1|DA|G|1702
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DC
- 50S ribosomal protein L2
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