IL_4U25_309

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_309 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1831

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4U25|1|DA|U|1864
4U25|1|DA|U|1865
4U25|1|DA|A|1866
4U25|1|DA|G|1867
*
4U25|1|DA|C|1874
4U25|1|DA|G|1875
4U25|1|DA|A|1876
4U25|1|DA|A|1877
4U25|1|DA|G|1878

Current chains

Chain DA

23S rRNA

Nearby chains