IL_4U25_322

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4U25|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_322 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3586

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4U25|1|DA|C|2129
4U25|1|DA|U|2130
4U25|1|DA|U|2131
4U25|1|DA|U|2132
4U25|1|DA|G|2133
4U25|1|DA|A|2134
4U25|1|DA|A|2135
4U25|1|DA|G|2136
*
4U25|1|DA|U|2155
4U25|1|DA|G|2156
4U25|1|DA|G|2157
4U25|1|DA|A|2158
4U25|1|DA|G|2159

Current chains

Chain DA

23S rRNA

Nearby chains