3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AG*CCU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U25_326 not in the Motif Atlas
Geometric match to IL_7A0S_054
Geometric discrepancy: 0.2105
The information below is about IL_7A0S_054
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

4U25|1|DA|A|2453
4U25|1|DA|G|2454
*
4U25|1|DA|C|2498
4U25|1|DA|C|2499
4U25|1|DA|U|2500

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DD
50S ribosomal protein L3

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1822 s