IL_4U25_340

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

4U25|1|DA|C|2712, 4U25|1|DA|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_340 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.1184

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4U25|1|DA|U|2695
4U25|1|DA|U|2696
*
4U25|1|DA|A|2711
4U25|1|DA|C|2712
4U25|1|DA|U|2713
4U25|1|DA|G|2714

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19