IL_4U25_366

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_366 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2633

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4U25|1|BA|C|2096
4U25|1|BA|A|2097
4U25|1|BA|U|2098
*
4U25|1|BA|A|2191
4U25|1|BA|U|2192
4U25|1|BA|G|2193

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CA

Small subunit ribosomal RNA; SSU rRNA