IL_4U25_370
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCAGG*CUCAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U25_370 not in the Motif Atlas
- Geometric match to IL_1LNT_002
- Geometric discrepancy: 0.382
- The information below is about IL_1LNT_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U25|1|CA|C|580
4U25|1|CA|G|581
4U25|1|CA|C|582
4U25|1|CA|A|583
4U25|1|CA|G|584
4U25|1|CA|G|585
*
4U25|1|CA|C|756
4U25|1|CA|U|757
4U25|1|CA|C|758
4U25|1|CA|A|759
4U25|1|CA|G|760
4U25|1|CA|G|761
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CH
- 30S ribosomal protein S8
- Chain CL
- 30S ribosomal protein S12
- Chain CO
- 30S ribosomal protein S15
- Chain CQ
- 30S ribosomal protein S17
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