IL_4U25_374

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUUGC*GAACUCA

Length

13 nucleotides

Bulged bases

4U25|1|CA|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|CA|U|1123
4U25|1|CA|G|1124
4U25|1|CA|U|1125
4U25|1|CA|U|1126
4U25|1|CA|G|1127
4U25|1|CA|C|1128
*
4U25|1|CA|G|1144
4U25|1|CA|A|1145
4U25|1|CA|A|1146
4U25|1|CA|C|1147
4U25|1|CA|U|1148
4U25|1|CA|C|1149
4U25|1|CA|A|1150

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10