IL_4U25_376

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGACCU*AGCAAGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|CA|G|1258
4U25|1|CA|C|1259
4U25|1|CA|G|1260
4U25|1|CA|A|1261
4U25|1|CA|C|1262
4U25|1|CA|C|1263
4U25|1|CA|U|1264
*
4U25|1|CA|A|1271
4U25|1|CA|G|1272
4U25|1|CA|C|1273
4U25|1|CA|A|1274
4U25|1|CA|A|1275
4U25|1|CA|G|1276
4U25|1|CA|C|1277

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CN

30S ribosomal protein S14

Chain CS

30S ribosomal protein S19