IL_4U25_382

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAG*CUCAC

Length

42 nucleotides

Bulged bases

4U25|1|DA|U|1065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|DA|G|1055
4U25|1|DA|G|1056
4U25|1|DA|A|1057
4U25|1|DA|U|1058
4U25|1|DA|G|1059
4U25|1|DA|U|1060
4U25|1|DA|U|1061
4U25|1|DA|G|1062
4U25|1|DA|G|1063
4U25|1|DA|C|1064
4U25|1|DA|U|1065
4U25|1|DA|U|1066
4U25|1|DA|A|1067
4U25|1|DA|G|1068
4U25|1|DA|A|1069
4U25|1|DA|A|1070
4U25|1|DA|G|1071
4U25|1|DA|C|1072
4U25|1|DA|A|1073
4U25|1|DA|G|1074
4U25|1|DA|C|1075
4U25|1|DA|C|1076
4U25|1|DA|A|1077
4U25|1|DA|U|1078
4U25|1|DA|C|1079
4U25|1|DA|A|1080
4U25|1|DA|U|1081
4U25|1|DA|U|1082
4U25|1|DA|U|1083
4U25|1|DA|A|1084
4U25|1|DA|A|1085
4U25|1|DA|A|1086
4U25|1|DA|G|1087
4U25|1|DA|A|1088
4U25|1|DA|A|1089
4U25|1|DA|A|1090
4U25|1|DA|G|1091
*
4U25|1|DA|C|1100
4U25|1|DA|U|1101
4U25|1|DA|C|1102
4U25|1|DA|A|1103
4U25|1|DA|C|1104

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DI

50S ribosomal protein L11