IL_4U25_387

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCCUU*AAUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_387 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3887

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4U25|1|DA|G|2102
4U25|1|DA|C|2103
4U25|1|DA|C|2104
4U25|1|DA|U|2105
4U25|1|DA|U|2106
*
4U25|1|DA|A|2183
4U25|1|DA|A|2184
4U25|1|DA|U|2185
4U25|1|DA|G|2186
4U25|1|DA|U|2187

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9