IL_4U25_390

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

4U25|1|BA|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U25_390 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.2361

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4U25|1|BA|U|1415
4U25|1|BA|G|1416
*
4U25|1|BA|C|1582
4U25|1|BA|A|1583
4U25|1|BA|U|1584
4U25|1|BA|C|1585
4U25|1|BA|A|1586
4U25|1|BA|G|1587

Current chains

Chain BA

23S rRNA

Nearby chains