IL_4U25_392

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUG

Length

33 nucleotides

Bulged bases

4U25|1|BA|U|2111, 4U25|1|BA|A|2114, 4U25|1|BA|G|2115, 4U25|1|BA|G|2116, 4U25|1|BA|A|2117, 4U25|1|BA|U|2118, 4U25|1|BA|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|BA|C|2103
4U25|1|BA|C|2104
4U25|1|BA|U|2105
4U25|1|BA|U|2106
4U25|1|BA|G|2107
4U25|1|BA|A|2108
4U25|1|BA|U|2109
4U25|1|BA|G|2110
4U25|1|BA|U|2111
4U25|1|BA|G|2112
4U25|1|BA|U|2113
4U25|1|BA|A|2114
4U25|1|BA|G|2115
4U25|1|BA|G|2116
4U25|1|BA|A|2117
4U25|1|BA|U|2118
4U25|1|BA|A|2119
4U25|1|BA|G|2120
4U25|1|BA|G|2121
4U25|1|BA|U|2122
4U25|1|BA|G|2123
*
4U25|1|BA|C|2175
4U25|1|BA|A|2176
4U25|1|BA|C|2177
4U25|1|BA|C|2178
4U25|1|BA|C|2179
4U25|1|BA|U|2180
4U25|1|BA|U|2181
4U25|1|BA|U|2182
4U25|1|BA|A|2183
4U25|1|BA|A|2184
4U25|1|BA|U|2185
4U25|1|BA|G|2186

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1