IL_4U26_174

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15568.1

Basepair signature

cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4U26|1|BB|C|71
4U26|1|BB|G|72
4U26|1|BB|A|73
4U26|1|BB|U|74
4U26|1|BB|G|75
4U26|1|BB|G|76
4U26|1|BB|U|77
4U26|1|BB|A|78
4U26|1|BB|G|79
*
4U26|1|BB|C|97
4U26|1|BB|G|98
4U26|1|BB|A|99
4U26|1|BB|G|100
4U26|1|BB|A|101
4U26|1|BB|G|102
4U26|1|BB|U|103
4U26|1|BB|A|104
4U26|1|BB|G|105

Current chains

Chain BB

5S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25