IL_4U26_360

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUUGAGCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGUUUGAUG

Length

47 nucleotides

Bulged bases

4U26|1|BA|U|2111, 4U26|1|BA|G|2112, 4U26|1|BA|U|2113, 4U26|1|BA|A|2114, 4U26|1|BA|G|2115, 4U26|1|BA|G|2116, 4U26|1|BA|A|2117, 4U26|1|BA|U|2118, 4U26|1|BA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U26|1|BA|C|2096
4U26|1|BA|A|2097
4U26|1|BA|U|2098
4U26|1|BA|U|2099
4U26|1|BA|G|2100
4U26|1|BA|A|2101
4U26|1|BA|G|2102
4U26|1|BA|C|2103
4U26|1|BA|C|2104
4U26|1|BA|U|2105
4U26|1|BA|U|2106
4U26|1|BA|G|2107
4U26|1|BA|A|2108
4U26|1|BA|U|2109
4U26|1|BA|G|2110
4U26|1|BA|U|2111
4U26|1|BA|G|2112
4U26|1|BA|U|2113
4U26|1|BA|A|2114
4U26|1|BA|G|2115
4U26|1|BA|G|2116
4U26|1|BA|A|2117
4U26|1|BA|U|2118
4U26|1|BA|A|2119
4U26|1|BA|G|2120
4U26|1|BA|G|2121
4U26|1|BA|U|2122
4U26|1|BA|G|2123
*
4U26|1|BA|C|2175
4U26|1|BA|A|2176
4U26|1|BA|C|2177
4U26|1|BA|C|2178
4U26|1|BA|C|2179
4U26|1|BA|U|2180
4U26|1|BA|U|2181
4U26|1|BA|U|2182
4U26|1|BA|A|2183
4U26|1|BA|A|2184
4U26|1|BA|U|2185
4U26|1|BA|G|2186
4U26|1|BA|U|2187
4U26|1|BA|U|2188
4U26|1|BA|U|2189
4U26|1|BA|G|2190
4U26|1|BA|A|2191
4U26|1|BA|U|2192
4U26|1|BA|G|2193

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L1

Chain BH

50S ribosomal protein L9

Chain CA

Small subunit ribosomal RNA; SSU rRNA