3D structure

PDB id
4U27 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U27_072 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0455
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4U27|1|BA|G|188
4U27|1|BA|G|189
4U27|1|BA|A|190
4U27|1|BA|A|191
4U27|1|BA|C|192
4U27|1|BA|U|193
4U27|1|BA|G|194
*
4U27|1|BA|C|201
4U27|1|BA|U|202
4U27|1|BA|A|203
4U27|1|BA|A|204
4U27|1|BA|G|205
4U27|1|BA|U|206
4U27|1|BA|A|207
4U27|1|BA|C|208

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B2
50S ribosomal protein L34
Chain B3
50S ribosomal protein L35
Chain BL
50S ribosomal protein L15
Chain BX
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3803 s