IL_4U27_144

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4U27|1|BA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_144 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.1156

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4U27|1|BA|G|2067
4U27|1|BA|U|2068
4U27|1|BA|G|2069
*
4U27|1|BA|C|2442
4U27|1|BA|C|2443

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Linopristin

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15