IL_4U27_366

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U27_366 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.2764

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4U27|1|BA|C|2096
4U27|1|BA|A|2097
4U27|1|BA|U|2098
*
4U27|1|BA|A|2191
4U27|1|BA|U|2192
4U27|1|BA|G|2193

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CA

Small subunit ribosomal RNA; SSU rRNA