3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
4U3M|1|1|A|519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_019 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.0467
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

4U3M|1|1|G|517
4U3M|1|1|G|518
4U3M|1|1|A|519
4U3M|1|1|U|520
4U3M|1|1|A|521
4U3M|1|1|A|522
4U3M|1|1|A|523
4U3M|1|1|U|524
4U3M|1|1|C|525
*
4U3M|1|1|G|567
4U3M|1|1|G|568
4U3M|1|1|A|569
4U3M|1|1|A|570
4U3M|1|1|U|571
4U3M|1|1|A|572
4U3M|1|1|C|573

Current chains

Chain 1
25s rRNA

Nearby chains

Chain L4
60S ribosomal protein L4-A
Chain L7
60S ribosomal protein L7-A
Chain M4
60S ribosomal protein L14-A
Chain N0
60S ribosomal protein L20-A

Coloring options:


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