IL_4U3M_021

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3M_021 not in the Motif Atlas

Homologous match to IL_5TBW_021

Geometric discrepancy: 0.0585

The information below is about IL_5TBW_021

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4U3M|1|1|G|668
4U3M|1|1|U|669
4U3M|1|1|C|670
*
4U3M|1|1|G|792
4U3M|1|1|C|793
4U3M|1|1|U|794

Current chains

Chain 1

25s rRNA

Nearby chains

Chain L4

60S ribosomal protein L4-A

Chain M3

60S ribosomal protein L13-A

Chain M8

60S ribosomal protein L18-A

Chain N8

60S ribosomal protein L28