IL_4U3M_175

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

4U3M|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3M_175 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.0958

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4U3M|1|2|G|867
4U3M|1|2|G|868
4U3M|1|2|A|869
4U3M|1|2|C|870
*
4U3M|1|2|G|957
4U3M|1|2|U|958
4U3M|1|2|U|959
4U3M|1|2|U|960
4U3M|1|2|U|961

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C3

40S ribosomal protein S13

Chain D7

40S ribosomal protein S27-A