3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
4U3M|1|2|C|1274
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_197 not in the Motif Atlas
Geometric match to IL_4V88_450
Geometric discrepancy: 0.0794
The information below is about IL_4V88_450
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.2
Basepair signature
cWW-L-cWS-cWW
Number of instances in this motif group
4

Unit IDs

4U3M|1|2|U|1272
4U3M|1|2|G|1273
4U3M|1|2|C|1274
4U3M|1|2|A|1275
4U3M|1|2|U|1276
*
4U3M|1|2|A|1436
4U3M|1|2|U|1437
4U3M|1|2|G|1438

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C0
40S ribosomal protein S10-B
Chain D0
40S ribosomal protein S20
Chain D9
40S ribosomal protein S29-A
Chain S3
40S ribosomal protein S3
Chain SM
Suppressor protein STM1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4287 s