3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAAC*GAGUGAAAAAGUAC
Length
18 nucleotides
Bulged bases
4U3M|1|5|A|398, 4U3M|1|5|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_245 not in the Motif Atlas
Homologous match to IL_5TBW_014
Geometric discrepancy: 0.0507
The information below is about IL_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.7
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

4U3M|1|5|G|376
4U3M|1|5|A|377
4U3M|1|5|A|378
4U3M|1|5|C|379
*
4U3M|1|5|G|390
4U3M|1|5|A|391
4U3M|1|5|G|392
4U3M|1|5|U|393
4U3M|1|5|G|394
4U3M|1|5|A|395
4U3M|1|5|A|396
4U3M|1|5|A|397
4U3M|1|5|A|398
4U3M|1|5|A|399
4U3M|1|5|G|400
4U3M|1|5|U|401
4U3M|1|5|A|402
4U3M|1|5|C|403

Current chains

Chain 5
25s rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain m7
60S ribosomal protein L17-A
Chain n6
60S ribosomal protein L26-A
Chain o9
60S ribosomal protein L39

Coloring options:


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