3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUUUG*CAUAC
Length
10 nucleotides
Bulged bases
4U3M|1|5|U|682
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_253 not in the Motif Atlas
Homologous match to IL_5TBW_022
Geometric discrepancy: 0.0665
The information below is about IL_5TBW_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74284.1
Basepair signature
cWW-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

4U3M|1|5|G|680
4U3M|1|5|U|681
4U3M|1|5|U|682
4U3M|1|5|U|683
4U3M|1|5|G|684
*
4U3M|1|5|C|696
4U3M|1|5|A|697
4U3M|1|5|U|698
4U3M|1|5|A|699
4U3M|1|5|C|700

Current chains

Chain 5
25s rRNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain m3
60S ribosomal protein L13-A
Chain m5
60S ribosomal protein L15-A
Chain n8
60S ribosomal protein L28

Coloring options:


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