3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGA*UAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_388 not in the Motif Atlas
Homologous match to IL_4V88_405
Geometric discrepancy: 0.0375
The information below is about IL_4V88_405
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.1
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
48

Unit IDs

4U3M|1|6|G|389
4U3M|1|6|G|390
4U3M|1|6|A|391
*
4U3M|1|6|U|406
4U3M|1|6|A|407
4U3M|1|6|C|408

Current chains

Chain 6
18S rRNA

Nearby chains

Chain n3
60S ribosomal protein L23-A
Chain n4
60S ribosomal protein L24-A
Chain s6
40S ribosomal protein S6-A
Chain s8
40S ribosomal protein S8-A

Coloring options:


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