3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUACA*UUAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_393 not in the Motif Atlas
Geometric match to IL_5J7L_338
Geometric discrepancy: 0.3371
The information below is about IL_5J7L_338
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4U3M|1|6|G|516
4U3M|1|6|U|517
4U3M|1|6|A|518
4U3M|1|6|C|519
4U3M|1|6|A|520
*
4U3M|1|6|U|532
4U3M|1|6|U|533
4U3M|1|6|A|534
4U3M|1|6|A|535
4U3M|1|6|C|536

Current chains

Chain 6
18S rRNA

Nearby chains

Chain d4
40S ribosomal protein S24-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


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