3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUGGC*GAUUUCCAA
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_401 not in the Motif Atlas
Homologous match to IL_4V88_420
Geometric discrepancy: 0.2195
The information below is about IL_4V88_420
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_97253.1
Basepair signature
cWW-L-R-L-R-L-cWW-L-L-R-L
Number of instances in this motif group
1

Unit IDs

4U3M|1|6|U|649
4U3M|1|6|U|650
4U3M|1|6|G|651
4U3M|1|6|G|652
4U3M|1|6|C|653
*
4U3M|1|6|G|677
4U3M|1|6|A|678
4U3M|1|6|U|679
4U3M|1|6|U|680
4U3M|1|6|U|681
4U3M|1|6|C|682
4U3M|1|6|C|683
4U3M|1|6|A|684
4U3M|1|6|A|685

Current chains

Chain 6
18S rRNA

Nearby chains

Chain d2
40S ribosomal protein S22-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


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