3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUG*UUAUC
Length
8 nucleotides
Bulged bases
4U3M|1|6|U|1370, 4U3M|1|6|A|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3M_436 not in the Motif Atlas
Homologous match to IL_4V88_457
Geometric discrepancy: 0.0826
The information below is about IL_4V88_457
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4U3M|1|6|G|1352
4U3M|1|6|U|1353
4U3M|1|6|G|1354
*
4U3M|1|6|U|1369
4U3M|1|6|U|1370
4U3M|1|6|A|1371
4U3M|1|6|U|1372
4U3M|1|6|C|1373

Current chains

Chain 6
18S rRNA

Nearby chains

Chain c6
40S ribosomal protein S16-A
Chain c9
40S ribosomal protein S19-A

Coloring options:


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