3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AGAUGG*CGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAU
Length
40 nucleotides
Bulged bases
4U3M|1|1|C|1556, 4U3M|1|1|A|1558, 4U3M|1|1|G|1573, 4U3M|1|1|C|1581
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U3M|1|1|A|1537
4U3M|1|1|G|1538
4U3M|1|1|A|1539
4U3M|1|1|U|1540
4U3M|1|1|G|1541
4U3M|1|1|G|1542
*
4U3M|1|1|C|1551
4U3M|1|1|G|1552
4U3M|1|1|U|1553
4U3M|1|1|U|1554
4U3M|1|1|U|1555
4U3M|1|1|C|1556
4U3M|1|1|A|1557
4U3M|1|1|A|1558
4U3M|1|1|A|1559
4U3M|1|1|G|1560
4U3M|1|1|G|1561
4U3M|1|1|C|1562
4U3M|1|1|C|1563
4U3M|1|1|U|1564
4U3M|1|1|G|1565
4U3M|1|1|A|1566
4U3M|1|1|U|1567
4U3M|1|1|U|1568
4U3M|1|1|U|1569
4U3M|1|1|U|1570
4U3M|1|1|A|1571
4U3M|1|1|U|1572
4U3M|1|1|G|1573
4U3M|1|1|C|1574
4U3M|1|1|A|1575
4U3M|1|1|G|1576
4U3M|1|1|G|1577
4U3M|1|1|C|1578
4U3M|1|1|C|1579
4U3M|1|1|A|1580
4U3M|1|1|C|1581
4U3M|1|1|C|1582
4U3M|1|1|A|1583
4U3M|1|1|U|1584

Current chains

Chain 1
25s rRNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain L2
60S ribosomal protein L2-A
Chain L8
60S ribosomal protein L8-A
Chain M5
60S ribosomal protein L15-A
Chain N5
60S ribosomal protein L25
Chain O7
60S ribosomal protein L37-A

Coloring options:

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