IL_4U3N_516

3D structure

PDB id

4U3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3N_516 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3735

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4U3N|1|5|G|171
4U3N|1|5|G|172
*
4U3N|1|5|U|246
4U3N|1|5|C|247
4U3N|1|5|U|248

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain m3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A