IL_4U3U_111

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

4U3U|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_111 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.0394

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4U3U|1|1|U|2891
4U3U|1|1|A|2892
*
4U3U|1|1|U|2909
4U3U|1|1|A|2910
4U3U|1|1|A|2911
4U3U|1|1|G|2912

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain L9

60S ribosomal protein L9-A

Chain Q0

Ubiquitin-60S ribosomal protein L40