3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AUU*AUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3U_347 not in the Motif Atlas
Homologous match to IL_5TBW_115
Geometric discrepancy: 0.0619
The information below is about IL_5TBW_115
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4U3U|1|5|A|3012
4U3U|1|5|U|3013
4U3U|1|5|U|3014
*
4U3U|1|5|A|3040
4U3U|1|5|U|3041
4U3U|1|5|U|3042

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l3
60S ribosomal protein L3
Chain n3
60S ribosomal protein L23-A

Coloring options:


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