IL_4U3U_400

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_400 not in the Motif Atlas

Homologous match to IL_4V88_417

Geometric discrepancy: 0.0468

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4U3U|1|6|G|624
4U3U|1|6|C|625
4U3U|1|6|U|626
*
4U3U|1|6|A|973
4U3U|1|6|A|974
4U3U|1|6|C|975

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain c3

40S ribosomal protein S13