3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AU*AAU
Length
5 nucleotides
Bulged bases
4U3U|1|6|A|506
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3U_491 not in the Motif Atlas
Homologous match to IL_8P9A_399
Geometric discrepancy: 0.1732
The information below is about IL_8P9A_399
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

4U3U|1|6|A|481
4U3U|1|6|U|482
*
4U3U|1|6|A|505
4U3U|1|6|A|506
4U3U|1|6|U|507

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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