IL_4U3U_493

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGUU*GACCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U3U_493 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.1804

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U3U|1|6|U|822
4U3U|1|6|G|823
4U3U|1|6|G|824
4U3U|1|6|U|825
4U3U|1|6|U|826
*
4U3U|1|6|G|846
4U3U|1|6|A|847
4U3U|1|6|C|848
4U3U|1|6|C|849
4U3U|1|6|A|850

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain m9

60S ribosomal protein L19-A