3D structure

PDB id
4U3U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Cycloheximide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AC*GAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U3U_500 not in the Motif Atlas
Homologous match to IL_8CRE_428
Geometric discrepancy: 0.1392
The information below is about IL_8CRE_428
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68140.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
18

Unit IDs

4U3U|1|2|A|746
4U3U|1|2|C|747
*
4U3U|1|2|G|802
4U3U|1|2|A|803
4U3U|1|2|A|804
4U3U|1|2|U|805

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C1
40S ribosomal protein S11-A
Chain D2
40S ribosomal protein S22-A
Chain D3
40S ribosomal protein S23-A
Chain S7
40S ribosomal protein S7-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0934 s