IL_4U4O_088

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUG*CAC

Length

7 nucleotides

Bulged bases

4U4O|1|1|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_088 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.2752

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4U4O|1|1|G|2409
4U4O|1|1|U|2410
4U4O|1|1|U|2411
4U4O|1|1|G|2412
*
4U4O|1|1|C|2810
4U4O|1|1|A|2811
4U4O|1|1|C|2812

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L4

60S ribosomal protein L4-A

Chain N8

60S ribosomal protein L28

Chain N9

60S ribosomal protein L29