IL_4U4O_093
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUG*CAGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_093 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.2395
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93503.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4U4O|1|1|C|2666
4U4O|1|1|A|2667
4U4O|1|1|U|2668
4U4O|1|1|G|2669
*
4U4O|1|1|C|2685
4U4O|1|1|A|2686
4U4O|1|1|G|2687
4U4O|1|1|U|2688
4U4O|1|1|A|2689
4U4O|1|1|G|2690
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L5
- 60S ribosomal protein L5
- Chain M1
- 60S ribosomal protein L11-B
- Chain N1
- 60S ribosomal protein L21-A
- Chain SM
- Suppressor protein STM1
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