IL_4U4O_157

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUGCCAG*CGGUAAUUCC

Length

18 nucleotides

Bulged bases

4U4O|1|2|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|2|G|561
4U4O|1|2|G|562
4U4O|1|2|U|563
4U4O|1|2|G|564
4U4O|1|2|C|565
4U4O|1|2|C|566
4U4O|1|2|A|567
4U4O|1|2|G|568
*
4U4O|1|2|C|575
4U4O|1|2|G|576
4U4O|1|2|G|577
4U4O|1|2|U|578
4U4O|1|2|A|579
4U4O|1|2|A|580
4U4O|1|2|U|581
4U4O|1|2|U|582
4U4O|1|2|C|583
4U4O|1|2|C|584

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S3

40S ribosomal protein S3

Chain SM

Suppressor protein STM1