IL_4U4O_173

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGUAUU*AAGACU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|2|A|884
4U4O|1|2|G|885
4U4O|1|2|U|886
4U4O|1|2|A|887
4U4O|1|2|U|888
4U4O|1|2|U|889
*
4U4O|1|2|A|923
4U4O|1|2|A|924
4U4O|1|2|G|925
4U4O|1|2|A|926
4U4O|1|2|C|927
4U4O|1|2|U|928

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C4

40S ribosomal protein S14-A

Chain D6

40S ribosomal protein S26-B

Chain L2

60S ribosomal protein L2-A

Chain S1

40S ribosomal protein S1-A